论文
| • Gao L., Wang H., CHen Y., Chen Z., Deng L., Liu D DIng X., Le Z., Liu Y., Du Y., Wang Q., Dou Y., Wang D., Huang Y., Zhan L., Lei S., Liu Q., Jiang T., Ren M., Feng Z., Li A., Gong H., Xu X.*, Xu C.*, Wang X.*,Yan, J.* (2025) Integrative Analysis of Single-Neuron Projectomes Links Connectome, Transcriptome,and Function in the Mouse Cortex. Neuron. 114: 1-19. |
| • Gou, L., Wang, Y., Gao, L., Liu, S., Wang, M., Chai, Q., Fang J., Zhan L., Shen X., Jiang T., Ren W., Ren M., Jia X., Xiao C., Li A., Li X., Luo Q., Gouki Okazawa., Yang T., Liu Z., Poo M., Yang X.,* Shen Z.,* Xu C.,* Yan, J.* (2025) Single-neuron projectomes of macaque prefrontal cortex reveal refined axon targeting and arborization. Cell 188(14): 3806-3822. e24. |
| • Gou, L., Wang, Y., Gao, L., Zhong, Y., Xie, L., Wang, H., Zha X., Shao Y., Xu H., Xu X., Yan, J.* (2024) Gapr for large-scale collaborative single-neuron reconstruction. Nature Methods. 21(10): 1926-1935. |
| • Liu, S., Gao, L., Chen, J., & Yan, J.* (2024) Single-neuron analysis of axon arbors reveals distinct presynaptic organizations between feedforward and feedback projections. Cell Reports. 43(1): |
| • Gao, L., Liu, S., Wang, Y., Wu, Q., Gou, L., Yan, J.* (2023) Single-neuron analysis of dendrites and axons reveals the network organization in mouse prefrontal cortex. Nat. Neurosci. 26(6): 1111-1126. |
| • Xie, L., Xiong, Y., Ma, D., Shi, K., Chen, J., Yang, Q., Yan, J.* (2023) Cholecystokinin neurons in mouse suprachiasmatic nucleus regulate the robustness of circadian clock. Neuron. 111(14): 2201-2217. |
| • Gao, L., Liu, S., Gou, L., Hu, Y., Liu, Y., Deng, L., Ma, D., Wang, H., Yang, Q., Chen, Z., Liu, D., Qiu, S., Wang, X., Wang, D., Wang, X., Ren, B., Liu, Q., Chen, T., Shi, X., Yao, H., Xu, C., Li, C., Sun, Y., Li, A., Luo, Q., Gong, H.*, Xu, N.*, & Yan, J.* (2022) Single-neuron projectome of mouse prefrontal cortex. Nat. Neurosci. 25: 515-529. |
| • Zhang, H., Wang, H., Shen, X., Jia, X., Yu, S., Qiu, X., Wang, Y., Du, J.*, Yan, J.*, He, J.* (2021) The landscape of regulatory genes in brain-wide neuronal phenotypes of a vertebrate brain. elife 10: e68224 |
| • Wang , H., Yang , Z., Li , X., Huang, D., Yu, S., He , J.*, Li , Y.*, Yan, J.* (2020) Single-cell in vivo imaging of cellular circadian oscillators in zebrafish. PLOS Biol. 18(3): 0-e3000435 |
| • Wen, S., Ma, D., Zhao, M., Xie, L., Wu, Q., Gou, L., Zhu, C., Fan, Y., Wang H. & Yan, J.* (2020) Spatiotemporal single-cell analysis of gene expression in the mouse suprachiasmatic nucleus. Nat. Neurosci. 23(3): 456–467 |
| • Fan, Z., Zhao, M., Joshi, P., Li, P., Zhang, Y., Guo, W., Xu, Y., Wang, H., Zhao, Z., (2017) A class of circadian long non-coding RNAs mark enhancers modulating long-range circadian gene regulation. Nucleic. Acids. Res. 45: 5720-5738 |
| • Xu, Y., Guo, W., Li, P., Zhang, Y., Zhao, M., Fan, Z., Zhao, Z., Yan, J.* (2016) Long-range chromosome interactions mediated by cohesin shape circadian gene expression. Plos Genet. 12: e1005992 |
| • Li, Y., Li, G., G？rling, B., Luy, B., Du, J., and Yan, J. (2015) Integrative Analysis of Circadian Transcriptome and Metabolic Network Reveals the Role of de novo Purine Synthesis in Circadian Control of Cell Cycle. Plos Comput.Biol. 11: e1004086 |
| • Liu, J., Wang, X., Li, J., Wang, H., Wei, G., Yan, J.* (2014) Reconstruction of the Gene Regulatory Network Involved in the Sonic Hedgehog Pathway with a Potential Role in Early Development of the Mouse Brain. Plos Comput.Biol. 10: e1003884 |
| • Liu, Y., Hu, W., Murakawa, Y., Yin, J., Wang, G., Landthaler, M., and Yan, J. (2013) Cold-induced RNA-binding proteins regulate circadian gene expression by controlling alternative polyadenylation. Sci.Rep. 3: 2054 |
| • Li, Y., Li, G., Wang, H., Du, J., and Yan, J. (2013) Analysis of a gene regulatory cascade mediating circadian rhythm in zebrafish. Plos Comput.Biol. 9: e1002940 |
| • Wang, H., Liu, Y., Briesemann, M., and Yan, J. (2010) Computational Analysis of Gene Regulations in Animal Sleep Deprivation. Physiol Genomics 42: 427-36 |
| • Shao, C., Liu, Y., Ruan, H., Li, Y., Wang, H., Kohl, F., Goropashnaya, A.V., Fedorov, V.B., Zeng, R., Barnes, B.M., Yan, J. (2010) Shotgun proteomics analysis of hibernating arctic ground squirrels. Mol. Cell Proteomics 9: 313-26 |
| • Yan, J., Wang, H., Liu, Y., and Shao, C. (2008) Analysis of gene regulatory networks in the mammalian circadian rhythm. Plos Comput.Biol. 4: e1000193 |
